PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g01270.1
Common NameLR48_Vigan09g014700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 156aa    MW: 17437.4 Da    PI: 9.459
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g01270.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.18.9e-183180255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Vang05g01270.1 31 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYATPVAAARAYDTAVFYLRG 80
                    69*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.43E-213189IPR016177DNA-binding domain
PROSITE profilePS5103222.0623188IPR001471AP2/ERF domain
SMARTSM003803.6E-373194IPR001471AP2/ERF domain
CDDcd000188.48E-283290No hitNo description
PfamPF008473.3E-113280IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-303289IPR001471AP2/ERF domain
PRINTSPR003676.9E-123243IPR001471AP2/ERF domain
PRINTSPR003676.9E-127090IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MEEGLGDCCS SNSTTTRKTQ KRKQQQHQDK PYRGIRMRKW GKWVAEIREP NKRSRIWLGS  60
YATPVAAARA YDTAVFYLRG PSARLNFPEL LFQDDDVSTQ EGNMSADCIR KKATQVGARV  120
DALQTALQSS SSHSANSSHV SSDKPDLNEY PKPED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-152888263ATERF1
3gcc_A1e-152888263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11623RKTQKRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014499763.11e-100PREDICTED: ethylene-responsive transcription factor RAP2-1-like
SwissprotQ8LC307e-52RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A0L9V9271e-115A0A0L9V927_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RAZ51e-115A0A0S3RAZ5_PHAAN; Uncharacterized protein
STRINGGLYMA04G04355.16e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.13e-51DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]